Abstract:[Background] The scales of red-hearted dragon fruit appear yellowing, wilting and moldy stalks when storing at room temperature for 3 days. The fruit rot rate is higher than 55% for 8 days, as well as 95.5% for 16 days. [Objective] To isolate and identify the main spoilage microorganisms and screen the antagonistic strains with the best antiseptic effect of red-hearted dragon fruit. [Methods] The spoilage microorganisms of red-hearted dragon fruit were isolated by pure culture. The dominant spoilage bacteria inoculated into dragon fruit were identified based on physiological and biochemical characteristics combined with sequences analysis of bacterial 16S rRNA gene、fungal rDNA ITS and bioinformatic analysis. 11 Bacillus subtilis strains as the tested antagonistic strains were used as biological antisepsis for dragon fruit. [Results] A total of 60 spoilage bacteria were isolated from naturally decomposed red-heart dragon fruit, of which bacteria accounted for 38.33% and fungi accounted for 61.67%. All of them were inoculated into red-hearted dragon fruit, and then 2 spoilage bacteria causing 100% rotten were found when storing at room temperature for 27 days. The two spoilage bacteria were identified as P. expansum named BP15 and E. nigrum named BP25. The plate antagonism test showed that the inhibitory rate of Bacillus amyloliquefaciens 10075 to the BP15 and BP25 strains was the most significant, which reached 60.59% and 84.73%, respectively. The 10075 filtered sterile supernatant with a concentration of 90% was used to inhibit BP15 and BP25, of which the inhibitory rate were 54.32% and 90.00%, respectively. However, heat treatment of the supernatant resulted in the inhibitory rate of BP15 and BP25 decreasing by 1.30% and 12.43%, respectively. With 90% 10075 filter sterilization supernatant spraying on dragon fruit, the biological antisepsis characteristic was higher than 30% after 10 days’ treatment. The research provides an effective biological antisepsis method for storage and preservation of dragon fruit. [Conclusion] Dragon fruit has extremely high economic value, nutritional value and medicinal value, however it is easy to rot at room temperature. The research can provide an effective biological antisepsis method for the storage and preservation of dragon fruit at room temperature.