Abstract:[Background] Proteus mirabilis is a major zoonotic pathogen that can cause diarrhea of young sika deer (Cervus nippon), posing a serious threat to the sika deer farming industry. [Objective] To identify and characterize the bacterial pathogens and reveal the main pathological changes in the young sika deer suffering from diarrhea at a sika deer farm in Jilin. [Methods] We collected the jejunal contents of the young sika deer suffering from diarrhea, isolated the bacterial pathogens by the culture method, and identified the pathogens by Gram staining, microscopic examination, 16S rRNA and atpD sequencing, and phylogenetic analysis. In addition, we collected the jejunum, lung, liver, spleen, kidney, and heart samples from diarrheal sika deer to prepare pathological sections. The bacterial pathogens were characterized in terms of virulence genes, biofilm formation, antibiotic resistance, antibiotic resistance genes, and pathogenicity in mice.[Results] Three strains of P. mirabilis were identified and named SKPM1, SKPM2, and SKPM3, respectively. All of the three strains carried seven virulence genes (ureC, zapA, atfC, atfA, rsbA, ucaA, and pmfA) and could form biofilms. The three strains had resistance to multiple antibiotics including penicillin, cefalexin, gentamicin, tetracycline, and polymyxin B and carried resistance genes such as blaTEM, blaCTX-M, tetB, ant(3″)-I, and sul2. Strain SKPM2 showed the LD50 of 3.98×107 CFU/mL in mice. [Conclusion] We isolated and characterized three strains of P. mirabilis from sika deer. The findings provided an experimental basis for the prevention, treatment, and intensive research of the disease that caused by this bacterium in young deer.