Abstract:[Background] Micrococcus luteus is an opportunistic pathogen that can cause a variety of diseases such as pneumonia, endocarditis, and sepsis. The isolation of actinomycetes from desert environments and identification of their antibacterial compounds have become research hotspots in recent years. [Objective] To screen antagonistic actinomycete strains against M. luteus, isolate and purify antibacterial compounds, and evaluate their cytotoxicity. [Methods] The antagonistic strains of M. luteus were screened from desert soil by the dilution plate method. The strains with strong inhibitory effects were identified by 16S rRNA sequencing and morphological observation. The antibacterial compounds were isolated by gel column chromatography and Sephadex LH-20 chromatography after fermentation in the optimum fermentation media. The minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) were determined by the microtiter-well method, and the cytotoxicity of the compounds to RAW264.7 macrophages was evaluated by the methylthiazolyldiphenyl tetrazolium bromide (MTT) method.[Results] An actinomycete strain TRM 58446-WSY exhibiting significant inhibitory activity was isolated from the soil of the Taklimakan Desert and identified as Streptomyces griseoincarnatus. A compound, 3,4-di-tert-butylphenol (3,4-DTBP), antagonistic to M. luteus, was isolated and purified from the fermentation broth of the strain. This compound showed the MIC of 55.34 μg/mL, MBC of 57.62 μg/mL, and no toxicity to RAW264.7 macrophages. [Conclusion] The antagonistic strain S. griseoincarnatus TRM 58446-WSY and its metabolite 3,4-DTBP had good antagonistic activity against M. luteus and no cytotoxicity, serving as a strain and a compound supporting the development of natural antibacterial drugs.